[BioC] HTqPCR: normalizeCtData

[Ali Mohammadian]

Dear all,



1- In normalizeCtData for norm="geometric.mean" , Can we average over
all arrays or should we obrain the geometric mean of all samples?
2- geo.mean.ref= apply (a40set at exprs,1 , mean, na.rm=TRUE) gives an
error but margin =2 does not produces an error, To me this is
uncomprehensible.

normalizeCtData(a40set, norm="geometric.mean",geo.mean.ref= apply
(a40set at exprs,1 , mean, na.rm=TRUE))