[BioC] Updating Package Versions from SVN

[Dan Tenenbaum]

Hi Chris,


On Mon, Mar 26, 2012 at 4:04 PM, chris_utah <chris.gregg at neuro.utah.edu> wrote:
> Hi,
>
> I am attempting to update DESeq with the latest version in found in Subversion.  I have downloaded the latest version of DESeq to my hard drive using:
>
> svn co https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DESeq
> What steps do I take to incorporate the features of the new version into my existing DESeq package?


Instead of this, it's probably a better idea to open R and type:
source("http://bioconductor.org/biocLite.R")
biocLite("DESeq")

This will give you the latest version of DESeq for the version of R
you are running. If you are running a pre-release version of R 2.15,
you will get the version of DESeq that is equivalent (within a day) to
the one in svn trunk.

Dan

>
> Thank you very much for any help.
>
> best wishes,
> Chris
>
> Christopher Gregg, PhD.
> New York Stem Cell Foundation-Robertson Investigator
> Assistant Professor, Neurobiology and Anatomy
> Adjunct Assistant Professor, Human Genetics
> 323 Wintrobe Bldg 530
> University of Utah, School of Medicine
> 20 North 1900 East, 401 MREB
> Salt Lake City, Utah 84132-3401
>
> phone: (801) 581-8212
> fax: (801) 585-9736
> ------------------------------------
> Gregg Lab Website: www.neuro.utah.edu/labs/gregg/index.html
>
>
>
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