[BioC] PPDE results with 'NA' for the web Cyber-t
leo.zhang1985 at yahoo.com
Fri Mar 23 02:50:19 CET 2012
When I run the data (attachment) into web version cyber-t, I had a question that the PPDE(<p) and PPDE had some 'NA's.
I don't know the meaning.
Control data replicate columns:1,2,3,4
Experimental data replicate column: 6,7,8,9 ( the fifth column is blank) window size: 61 confidence value: 12
p-value: log-transformed or raw
When the confidence value is chosen 1, the results had no 'NA'.
However, the data has two conditions with four replicates each.
According to your suggestions, we set 12 and the results had a lot of 'NA' for PPDE and PPDE(<p)
I hope that you can give me some suggestion to remove the 'NA'
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