[BioC] SRAdb error

Sean Davis sdavis2 at mail.nih.gov
Fri Mar 23 00:50:00 CET 2012

2012/3/22 Ayten YIGITER <yigiter at hacettepe.edu.tr>:
> Hi, I am trying to get the SRAdb package work. I have successfully installed the SRAdb package and then I have got the following error:
> library(SRAdb)
> sqlfile <- getSRAdbFile()
> URL 'http://watson.nci.nih.gov/~zhujack/SRAmetadb.sqlite.gz' deneniyor
> Content type 'application/octet-stream' length 187043912 bytes (178.4 Mb)
> URL açıldı
> downloaded 178.4 Mb
> Unzipping...
> Error: sqliteNewConnection(drv, ...) :
> RS-DBI driver: (could not connect to dbname:
> unable to open database file"
> Could you help me at this point?

In addition to sessionInfo() output, could you show us the commands
that lead to the error?  It seems there might be something missing in
the commands you pasted since getSRAdbFile() should not be attempting
to connect to the database.


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