[BioC] How can I access to a gene set
James W. MacDonald
jmacdon at uw.edu
Thu Mar 22 14:15:15 CET 2012
On 3/22/2012 8:33 AM, Lola Guerrero wrote:
> Dear all,
> I have run a Hypergeometric test and so far so good. Now I am interested in the
> gene set that belong to a particular ontology. Do you know if exist any way to
> access to these genes? I mean, if for example I have an ontology which is
> defined by 10 genes and in my case the test count 5, how can I access to these
It depends on what package you used. If you used the GOstats package,
then there is probeSetSummary().
> Iâ€™ll appreciate any help! Thank you very much for your help!
> Lola Guerrero
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James W. MacDonald, M.S.
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099
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