[BioC] Copy number analysis

[Raj [guest]]

Dear Bioconductor community, 

  I am looking for a package for Copy number analysis using CEL file that I have obtained from Affy SNP 6.0. I have CHP files from birdseed. Now I want to analyze my data for Copy number and Loss of heterozygosity (using B allele frequency) and find regions of CN alterations and LOH with or without Copy number changes. Can anyone direct me to the correct package available for this?

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R studio

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