[BioC] how to get pig genome and for miRNA target scan

Sean Davis sdavis2 at mail.nih.gov
Thu Mar 15 05:14:41 CET 2012

2012/3/14 wang peter <wng.peter at gmail.com>:
> dear Dr José Afonso
> thank u for your reply, but i just found
> seq = getSequence(id="BRCA1", type="hugo", seqType="peptide", mart = mart)
> getSequence can be used to get one special sequence
> if i want to get all of 3'UTR from pig genome
> which function should i use?

I think you have answered your own question.  Please read the help
page for getSequence.  You can specify seqType='3utr' and give the ids
for your genes of interest after connecting to the correct mart.


More information about the Bioconductor mailing list