[BioC] how to read empty line in the fastqfile
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Thu Mar 8 23:04:35 CET 2012
On Thu, Mar 8, 2012 at 4:59 PM, wang peter <wng.peter at gmail.com> wrote:
> i often meet this problem after trimming the adapters
>> reads <- readFastq(fastqfile);
> Error: Input/Output
> message: unexpected empty line L003GAF-128.trimmed:61
One thing you can do is to avoid having empty lines in your FASTQ file.
The question is: how are they getting there?
What are you using to trim your reads?
If you are doing it in R then saving the output, maybe you want to
subset your trimmed object and remove 0-width fastq records before
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