[BioC] unable to readImage using EBImage package

[Henrik Bengtsson]

They're also interested in details about EBImage, so:

> library("EBImage");
> sessionInfo();

Over and out.

/Henrik

On Tue, Mar 6, 2012 at 6:16 PM, Nurdiyanah Jambari <yanadj28 at gmail.com> wrote:
> Sorry, I miss understood your request. This is the output of my
> sessionInfo():
>
>> sessionInfo()
> R version 2.14.1 (2011-12-22)
> Platform: i386-pc-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
> States.1252    LC_MONETARY=English_United States.1252
> LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
>
>
> On Wed, Mar 7, 2012 at 9:42 AM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
>
>> On Tue, Mar 6, 2012 at 4:35 PM, Nurdiyanah Jambari <yanadj28 at gmail.com>
>> wrote:
>> > Sorry, I forgot to mention that the system will go to not responding and
>> > need to be closed after the pop-up message appear.
>> >
>>
>> Please post the output of sessionInfo(), run it immediately before the
>> command that causes the error.
>>
>> Thanks,
>> Dan
>>
>> >
>> >
>> >
>> > On Wed, Mar 7, 2012 at 8:30 AM, Dan Tenenbaum <dtenenba at fhcrc.org>
>> wrote:
>> >>
>> >> On Tue, Mar 6, 2012 at 4:26 PM, Nurdiyanah Jambari <yanadj28 at gmail.com>
>> >> wrote:
>> >> > This error happen while I'm trying to view the example image. These is
>> >> > because I read from the manual, if I want to make sure that the
>> package
>> >> > is
>> >> > install correctly, it should be able to display the "lena.gif" image:
>> >> >
>> >> >
>> >> >>library("EBImage")
>> >> >>f = system.file("images", "lena.gif", package="EBImage")
>> >> >>lena = readImage(f)
>> >> >>display(lena)
>> >> >
>> >> >
>> >> >
>> >> Please post the output of
>> >> sessionInfo()
>> >> Thanks
>> >> Dan
>> >>
>> >>
>> >> >
>> >> > On Wed, Mar 7, 2012 at 3:14 AM, Dan Tenenbaum <dtenenba at fhcrc.org>
>> >> > wrote:
>> >> >>
>> >> >> On Tue, Mar 6, 2012 at 12:39 AM, Nurdiyanah Jambari
>> >> >> <yanadj28 at gmail.com>
>> >> >> wrote:
>> >> >> > Hi,
>> >> >> >
>> >> >> > Please help me with these problem. Every time I'm trying to display
>> >> >> > the
>> >> >> > example image, I receive these kind of pop-up warning:
>> >> >> >
>> >> >> >
>> >> >> > ** (<unknown>:2932): WARNING **: No builtin or dynamically loaded
>> >> >> > modules
>> >> >> > were found. Pango will not work correctly. This probably means
>> >> >> > there was an error in the creation of:
>> >> >> >   'C:\Windows\system32\etc\pango\pango.modules'
>> >> >> > You may be able to recreate this file by running
>> pango-querymodules.
>> >> >> >
>> >> >> > (<unknown>:2932): GLib-GObject-CRITICAL **: file gobject.c: line
>> 1561
>> >> >> > (g_object_
>> >> >> > ref): assertion `G_IS_OBJECT (object)' failed
>> >> >> >
>> >> >> > ** (<unknown>:2932): CRITICAL **: file pango-engine.c: line 68
>> >> >> > (_pango_engine_sh
>> >> >> > ape_shape): assertion `PANGO_IS_FONT (font)' failed
>> >> >> >
>> >> >> >
>> >> >> > I have try several method that I found searching from the internet,
>> >> >> > but
>> >> >> > still I could not fix these problem.
>> >> >>
>> >> >> It's difficult for us to help without knowing the exact commands you
>> >> >> tried that caused this error, and more information about your system
>> >> >> (e.g., the output of the sessionInfo() function).
>> >> >>
>> >> >> Dan
>> >> >>
>> >> >>
>> >> >> >
>> >> >> >
>> >> >> > Nurdiyanah Bt Hj Jambari
>> >> >> > Student
>> >> >> > Faculty of Engineering
>> >> >> > Bachelor Engineering of Computer & Communication System Engineering
>> >> >> > University Putra Malaysia
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > --
>> >> > Nurdiyanah Bt Hj Jambari
>> >> > Student
>> >> > Faculty of Engineering
>> >> > Bachelor Engineering of Computer & Communication System Engineering
>> >> > University Putra Malaysia
>> >
>> >
>> >
>> >
>> > --
>> > Nurdiyanah Bt Hj Jambari
>> > Student
>> > Faculty of Engineering
>> > Bachelor Engineering of Computer & Communication System Engineering
>> > University Putra Malaysia
>>
>
>
>
> --
> Nurdiyanah Bt Hj Jambari
> Student
> Faculty of Engineering
> Bachelor Engineering of Computer & Communication System Engineering
> University Putra Malaysia
>
>        [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor