[BioC] Help with plot comparison

[Simon Anders]

Hi Tina

On 03/02/2012 02:50 AM, Tina Asante Boahene wrote:
> I have been analysing some RNA-seq data using the packages DEGseq, edgeR and baySeq and I was wondering if anyone could help me to be able
> to produce a plot to show the number of DE found using these packages at an FDR of 0.1%. or possibly direct me to any good source that can be used to achieve this.

Not answering your question, but: An FDR of 0.1% (i.e., 0.001)? This is 
absurdly small. Are you sure you have proper replication?

   Simon