[BioC] A problem about trimLRPatterns

wang peter wng.peter at gmail.com
Thu Mar 1 22:05:05 CET 2012

i have found a problem
if we allow edit distance as 1, with indel=1
subject aaaaaaATCGACTG
pattern                TCGACTG
and i found some reads were trimmed ATCGACTG

that is ok for RNA-seq
but not ok for microRNA, if we want to keep the whole microRNA sequences

shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute
Cornell University
Tower Road, Ithaca, NY 14853-1801
Office phone: 1-607-254-1267(day)
Official email:sg839 at cornell.edu

More information about the Bioconductor mailing list