[BioC] gene2pathway retrain() error: species \'hsa\' unknown

[Carl Hinrichs [guest]]

Hi,
when using retrain() in the gene2pathway library I get the following error:

library(gene2pathway)
> retrain()
Retrieving KEGG information via SOAP ...
xmlns: URI SOAP/KEGG is not absolute
xmlns: URI SOAP/KEGG is not absolute
Fehler in gene2pathway:::buildTrainingSet(minnmap = minnmap, level1Only = level1Only,  : 
  Organism 'hsa' is unknown in KEGG! Please refer to <URL:http://www.genome.jp/kegg-bin/create_kegg_menu> for a complete list of supported organisms.

library(gene2pathway) leads to the following output:


Warnmeldungen:
1: Class "VirtualSOAPClass" is defined (with package slot ‘SSOAP’) but no metadata object found to revise subclass information---not exported?  Making a copy in package ‘.GlobalEnv’ 
2: Class "VirtualXMLSchemaClass" is defined (with package slot ‘XMLSchema’) but no metadata object found to revise subclass information---not exported?  Making a copy in package ‘.GlobalEnv’

I have no idea how to solve that problem...
Best regards
Carl

 -- output of sessionInfo(): 

> sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=de_DE.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=de_DE.UTF-8    
 [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=de_DE.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] gene2pathway_2.10.0  keggorthology_2.8.0  hgu95av2.db_2.7.1   
 [4] org.Hs.eg.db_2.7.1   org.Dm.eg.db_2.7.1   RSQLite_0.11.1      
 [7] DBI_0.2-5            AnnotationDbi_1.18.1 Biobase_2.16.0      
[10] BiocGenerics_0.2.0   RBGL_1.32.1          graph_1.34.0        
[13] KEGGSOAP_1.30.0      biomaRt_2.12.0       kernlab_0.9-14      

loaded via a namespace (and not attached):
[1] codetools_0.2-8 IRanges_1.14.3  RCurl_1.91-1    SSOAP_0.8-0    
[5] stats4_2.15.0   tools_2.15.0    XML_3.9-4       XMLSchema_0.7-2


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