[BioC] paired analysis in RNA Seq data using DESeq

[Natasha Sahgal]

Dear List,

I have some RNASeq data, paired samples (n=4) for a 2 vs 2 comparison: not tumour-normal pairs.

I was wondering if DESeq can now deal with paired analysis, especially using the multi-factor design section, as it could not earlier? Though I am aware that the edgeR package deals with paired analysis.



Many Thanks,
Natasha