[BioC] base-specific read counts

Yu Chuan Tai yuchuan at stat.berkeley.edu
Thu Jun 7 07:43:53 CEST 2012

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Hi,

Is there any way to calculate base-specific read counts for a given 
genomic interval (including 1-base interval), for paired-end data aligned 
by Bowtie2 in BAM format?
Thanks!

Best,
Yu Chuan

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