[BioC] Errors Installing Package qrqc under MacOsX

Fri Jun 1 01:06:29 CEST 2012

Hi Sue,

On Thu, May 31, 2012 at 8:01 AM, Sue Jones <sue.jones at hutton.ac.uk> wrote:
> I am using R version 2.15 under Mac OS X 10.6.8
> When i try to install the qrqc package using
>
> source("http://bioconductor.org/biocLite.R")
> biocLite("qrqc")
> library(qrqc)
>
> I get the following error message
> --------------------------------
> BioC_mirror: http://www.bioconductor.org
> Using R version 2.15, BiocInstaller version 1.4.4.

The latest version of BiocInstaller is 1.4.6 and your email was sent 8
hours ago. Are you still having this problem?

Dan

> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> Installing package(s) 'qrqc'
> Error: Line starting '<!DOCTYPE html PUBLI ...' is malformed!
> library(qrqc)
> Error in library(qrqc) : there is no package called ‘qrqc’
> ------------------------------------
>
> I think the first part of the error is perhaps related to the CRAN mirror -
> but even when I use this
> alternative suggested elsewhere on gmane
>
> biocLite("qrqc", type="source")
>
> I get a series of error message - the end of which is
>
> --------------------
> ERROR: dependency ‘biovizBase’ is not available for package ‘qrqc’
> * removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/qrqc’
>
> The downloaded source packages are in
>        ‘/private/var/folders/aS/aSrDK+ZQF+0QTLwvM0ZOXk+++TI/-Tmp-
> /RtmpVVshp3/downloaded_packages’
> Error: Line starting '<!DOCTYPE html PUBLI ...' is malformed!
> -----------------------
>
> Any help with what I am doing wrong would be appreciated.
>
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