[BioC] Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15

[Dan Tenenbaum]

On Tue, Jul 17, 2012 at 5:43 PM, Peng Yu <pengyu.ut at gmail.com> wrote:
> Hi,
>
> I get a warning when I try to install a bioc package.
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> is not accessible. But I don't understand why it is accessed. Does
> anybody know how to fix this problem?
>


This is just a warning. You can ignore it.


Dan


>     source("http://bioconductor.org/biocLite.R")
>     biocLite("ALL")

> BiocInstaller version 1.4.7, ?biocLite for help
> BioC_mirror: http://bioconductor.org
> Using R version 2.15, BiocInstaller version 1.4.7.
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> Installing package(s) 'ALL'
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> trying URL 'http://www.bioconductor.org/packages/2.10/data/experiment/bin/macosx/leopard/contrib/2.15/ALL_1.4.12.tgz'
> Content type 'application/x-gzip' length 11426100 bytes (10.9 Mb)
> opened URL
> ==================================================
> downloaded 10.9 Mb
>
>
> The downloaded binary packages are in
>         /var/folders/ok/okxjw3HGEsyvIrMaKBkHhE+++TI/-Tmp-//RtmpCArm2G/downloaded_packages
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.15
> Old packages: 'agricolae', 'animation', 'aplpack', 'aroma.affymetrix',
>   'aroma.apd', 'aroma.core', 'aroma.light', 'ca', 'Cairo', 'cairoDevice',
>   'Category', 'compositions', 'copula', 'depmixS4', 'diagram', 'dichromat',
>   'digest', 'doBy', 'drc', 'ellipse', 'elliptic', 'emulator', 'energy',
>   'Fahrmeir', 'filehash', 'fitdistrplus', 'gamlss', 'gamlss.data',
>   'gamlss.dist', 'geometry', 'glmnet', 'gmodels', 'GO.db', 'GOstats',
>   'GPArotation', 'graph', 'gridBase', 'gridExtra', 'grImport', 'GSEABase',
>   'gWidgets', 'gWidgetsRGtk2', 'gWidgetstcltk', 'HiddenMarkov', 'hmm.discnp',
>   'igraph', 'KEGG.db', 'lars', 'latticist', 'lavaan', 'mapdata', 'marray',
>   'matrixStats', 'mc2d', 'mcmc', 'MCMCpack', 'mouse.db0', 'msm', 'openair',
>   'org.Mm.eg.db', 'partitions', 'princurve', 'psych', 'qgraph', 'R.cache',
>   'R.filesets', 'R.huge', 'R.matlab', 'R.methodsS3', 'R.oo', 'R.rsp',
>   'R.utils', 'R2jags', 'raster', 'RBGL', 'Rcmdr', 'ReadImages', 'rggobi',
>   'RgoogleMaps', 'RGtk2', 'rJava', 'Rmpfr', 'RMySQL', 'Rsolnp',
>   'RSVGTipsDevice', 'sfsmisc', 'soiltexture', 'sos', 'splus2R', 'timecourse',
>   'topGO', 'TTR', 'vcdExtra', 'vrmlgen', 'WriteXLS', 'pasilla', 'rtracklayer'
>
>
> --
> Regards,
> Peng
>
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