[BioC] CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?

[James W. MacDonald]

Hi Fraser,

I don't see a publicly available cdf for this chip on Affy's website. We 
don't as a general rule supply non-publicly available data, so until it 
appears there I won't be able to build one.

However, if you have the cdf it is pretty simple to build. See 
makecdfenv and its help pages.

Best,

Jim



On 7/17/2012 1:35 PM, Fraser Sim wrote:
> Hi,
>
> Is there a BioC-compatible CDF file for miRNA 3.0 Arrays?
>
> I'm getting "mirna30cdf not available" error message when trying to run
> justRMA().
>
> Cheers,
> Fraser
>
> -----Original Message-----
> From: bioconductor-bounces at r-project.org
> [mailto:bioconductor-bounces at r-project.org] On Behalf Of Hooiveld, Guido
> Sent: Monday, October 17, 2011 11:13 AM
> To: bioconductor at r-project.org; attiafatima at gmail.com
> Subject: Re: [BioC] CDF for GeneChip miRNA 2 array
>
> Hi,
> It is available at the annotation section of the BioC downloads:
> http://www.bioconductor.org/packages/release/data/annotation/html/mirna20cdf
> .html
>
> HTH,
> Guido
>
> -----Original Message-----
> From: bioconductor-bounces at r-project.org
> [mailto:bioconductor-bounces at r-project.org] On Behalf Of ATTIA [guest]
> Sent: Monday, October 17, 2011 16:19
> To: bioconductor at r-project.org; attiafatima at gmail.com
> Subject: [BioC] CDF for GeneChip miRNA 2 array
>
>
> Hi there
> Has anyone  created a BioC-compatible CDF file for Affymetrix'
> GeneChip miRNA 2.0 Array .If yes would you please share it with me.thanks
> Attia Fatima
>
>   -- output of sessionInfo():
>
> na
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099