[BioC] what is the default parameters of estimateDispersions in the DESeq

[James W. MacDonald]

The default is always the first listed. So

estimateDispersions(object)

is really

estimateDispersions(object, "pooled","maximum","parametric")

Best,

Jim



On 7/11/2012 10:38 AM, wang peter wrote:
> hello all
> i donot know what is the default parameters of method,sharingMode,fitType
>
>
> estimateDispersions(object, method = c("pooled", "per-condition",
>          "blind"), sharingMode = c("maximum", "fit-only", "gene-est-only"),
>          fitType = c("parametric", "local"), locfit_extra_args = list(),
>          lp_extra_args = list(), modelFrame = NULL, modelFormula = count ~
>              condition, ...)
>

-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099