[BioC] how to get normalized counts from edgeR

wang peter wng.peter at gmail.com
Mon Jul 9 05:05:20 CEST 2012


dear all:
 i have two questions

1. is the "size factor" from DESeq equally to the "norm factor" in the edgeR

2. i can get the normalized counts by

counts(obj,normalized=T)

how to get normalized counts from edgeR
can i use the each col of count matrix divided by norm factor
-- 
shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute
Cornell University
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Office phone: 1-607-254-1267(day)
Official email:sg839 at cornell.edu
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