[BioC] Linkage Disequilibrium Analysis

[Ovokeraye Achinike-Oduaran]

Thanks Mete. I know about Haploview but I was hoping to find something in R.

Thanks again.

-Avoks

On Thu, Jul 5, 2012 at 3:13 PM, Mete Civelek <mcivelek at mednet.ucla.edu> wrote:
> Not sure about a Bioconductor package but you can try Haploview from Broad
> Institute.
>
> -----Original Message-----
> From: bioconductor-bounces at r-project.org
> [mailto:bioconductor-bounces at r-project.org] On Behalf Of Ovokeraye
> Achinike-Oduaran
> Sent: Thursday, July 05, 2012 2:58 PM
> To: bioconductor at r-project.org
> Subject: [BioC] Linkage Disequilibrium Analysis
>
> Hi all,
>
> Is there a package that takes just SNPs rs IDs as input to perform LD
> analysis and draw haplotype blocks?
>
> Thanks.
>
> -Avoks
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>
> IMPORTANT WARNING:  This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential.  You, the recipient, are obligated to maintain it in a safe, secure and confidential manner.  Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer.