[BioC] Error message when trying to create enrichment maps in HTSanalyzeR

[Valerie Obenchain]

Hi Catherine,

The 'object' argument needs to be a GSCA object. See the 'Arguments' 
section on the man page. You can get to the man page with ?viewEnrichMap.

Valerie



On 01/17/12 08:29, Catherine Garry wrote:
> Hi,
>
> I am trying to create enrichment maps in HTSanalyzeR. I am fairly new to
> using R so I am using the paper X Wang et al. 2011 as a reference. When i
> get to the section on creating the enrichment map i keep getting the same
> error message:
>
> Error in function (classes, fdef, mtable)  :
> unable to find an inherited method for function "viewEnrichMap", for
> signature "numeric"
>
> Can anyone explain why i keep getting this and how to correct it?
>
> This is the input i am putting in before i get this error message:
>
>> viewEnrichMap(data4enrich, resultName="GSEA.results",
> + gscs=c("PW_KEGG"), allSig=FALSE, ntop=30, gsNameType="term",
> + displayEdgeLabel=FALSE, layout="layout.fruchterman.reingold")
>
> Thank you.
>
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>
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