[BioC] KEGGSOAP

[Carlson, Marc R]

Hi Ricardo,

I think you are on the right track.  You will also want to look at the zzz.R file in KEGGSOAP which has the few lines of code needed (from the XML package) to parse the WSDL.  If you are curious about the KEGG API.  Have a look at their website:

http://www.kegg.jp/kegg/soap/doc/keggapi_manual.html

Does that answer your question?


  Marc


----- Original Message -----
From: "Ricardo Silva" <rsilvabioinfo at usp.br>
To: bioconductor at stat.math.ethz.ch
Sent: Tuesday, January 17, 2012 6:37:57 AM
Subject: [BioC] KEGGSOAP

Hi,

i'm a beginner user of KEGGSOAP and for my application, one of the most
important kegg functions is get_reactions_by_compound, can I create a
function to  KEGGSOAP
with something like this

function (compound.id.list)
{
require(KEGGSOAP)
    unlist(.SOAP(KEGGserver, "get_reactions_by_compounds", .soapArgs =
list(compounds_id_list = compound.id.list),
        action = KEGGaction, xmlns = c("URI", "SOAP/KEGG"), nameSpaces =
SOAPNameSpaces(version = KEGGsoapns),
        .types = list(listType)))
}

where do I found KEGGaction definitions?

best regards

Ricardo

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