[BioC] [lumi] methyLumiR upload error of 450k

[Geoff Woodward]

Thanks that's perfect!

--On 18 January 2012 14:25 -0800 "Tim Triche, Jr." <tim.triche at gmail.com> 
wrote:

> lumIDAT() will put the IDAT files into a MethyLumiM object
>
>
> as(mlumi, 'MethyLumiM') will coerce an existing MethyLumiSet into a
> MethyLumiM object
>
>
> hope this helps,
>
>
> --t
>
>
>
>
>
> On Wed, Jan 18, 2012 at 11:43 AM, wei wang <biowendy at gmail.com> wrote:
>
> Dear Geoff,
>
> When you open your "**FinalReport.txt" file using any text editor, do you
> see [Header] in the first line, and [Sample Methylation Profile] in about
> the 8th line?  Also check if there are extra blanks at the end of the
> first
> several lines.  Sometimes the extra blanks will mess up the reading.
>
> To convert MethyLumiSet to MethyLumi, you can try this:
> new_MethyLumi_data <- as(old_MethyLumiSet_data, "MethyLumi")
>
> Wei
>
>         [[alternative HTML version deleted]]
>
>
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>
>
>
>
> --
> If people do not believe that mathematics is simple,
> it is only because they do not realize how complicated life is.
>
> John von Neumann



-----------------------------------------

Geoff Woodward
Research Associate in Bioinformatics
School of Social and Community Medicine
University of Bristol
Oakfield House
Oakfield Grove
Clifton
Bristol BS8 2BN

E: geoff.woodward at bristol.ac.uk
T: 0117 33 13315