[BioC] Anything wrong with http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.13

[Steve Lianoglou]

Hi Peng,

Not the optimal solution, but maybe you can download the (source)
packages for the chip you want?

It looks like "Version 14" are the packages appropriate for R 2.13:

http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp#v14

HTH,
-steve

On Wed, Jan 18, 2012 at 11:31 AM, Peng Yu <pengyu.ut at gmail.com> wrote:
> On Wed, Jan 18, 2012 at 10:28 AM, Peng Yu <pengyu.ut at gmail.com> wrote:
>> Hi,
>>
>> R version 2.13.0 (2011-04-13)
>> Copyright (C) 2011 The R Foundation for Statistical Computing
>> ISBN 3-900051-07-0
>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>
>> I have the above version of R installed on my MacBook Pro. When I try
>> to install a package, I get the following error. It seems there there
>> is nothing at that URL.  Does anybody how to fix the problem?
>>
>>
>>>     source("http://www.bioconductor.org/biocLite.R")
>> BioC_mirror = http://bioconductor.org
>> Change using chooseBioCmirror().
>>>     biocLite("nucleR")
>> Using R version 2.13.0, biocinstall version 2.8.4.
>> Installing Bioconductor version 2.8 packages:
>> [1] "nucleR"
>> Please wait...
>>
>> Warning: unable to access index for repository
>> http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.13
>> Warning message:
>> In getDependencies(pkgs, dependencies, available, lib) :
>>  package ‘nucleR’ is not available (for R version 2.13.0)
>
> I should have provided the sessionInfo as well. Here is it.
>
>> sessionInfo()
> R version 2.13.0 (2011-04-13)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_2.13.0
>
> --
> Regards,
> Peng
>
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-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact