[BioC] I AM NEW USER TO XCMS AND REALLY NEED HELP!

[HABIBALLAH HAMZEHZARGHANI]

I AM A NEW USED OF XCMS WHO DOES NOT KNOW HOW TO WORK WITH R BUT VERY INTERESTED TO TRY XCMS FOR DECONVOLUTION, BASE NOOISE CORRECTION AND PEAK ALIGNMENT OF MY NETCDF GCMS FILES.
I FOLLOWED THE INSTRUCTIONS GIVEN ON YOUR WEBSITE @ http://www.bioconductor.org/packages/release/bioc/html/xcms.html
TO INSTALL XCMS ON MY COMPOUTER. APPEARENTLY TO INSTALL XCMS Release (2.9), ONE SHOULD COPY AND PAST THE FOLLOWING SCRIPT INTO R:
To install this package, start R and enter:
    source("http://www.bioconductor.org/biocLite.R")
    biocLite("xcms")
 
I DID EXACTLY THE SAME THING AND WHAT I GOT WAS THE MESSAGE SHOWING IN THE R CONSOLE AS SHOWN IN THE PICTURED INSERTED IN THE ATTACHED FILE.
I DO NOT KNOW WHAT I DID WRONG OR IF I NEEDED TO DO SOME PRELIMINARY PREPARATION I DID NOT DO?
I TRIED FINDING OTHER WAYS AND WENT THROUGH Installation Instructions for xcms ON YOUR WEBSITE (@http://www.bioconductor.org/packages/release/bioc/html/xcms.html). I DOWNLOADED zipfiles of multtest, xcms and faahKO AND INSTALLED THEM USING INSTALL PACKAGES AND GOT THEM INSTALLED AND UNPACKED SUCCESSFULLY, HOWEVER WHEN I TRY USING IT, IT DOES NOT WORK. I AM JUST FRUSTRATED, SOMEBODY PLEASE HELP.  
BEST REGARDS
HABIB
 
 It is not the strongest of the species that survive, nor the most intelligent, but the one most responsive to change. -Charles Darwin
 
--------------------------------------------------
H.Hamzehzarghani, 
Ph.D, Assistant Professor
Department of Plant Protection
College of Agriculture, Badjgah
Shiraz University, Shiraz, 
Postal Code: 71444-65186  IRAN
Phone: +1198-711-613-8322
Fax: +1198-711-228-6087
--------------------------------------------------- 
 
     


________________________________
From: Dan Tenenbaum <dtenenba at fhcrc.org>
To: Glynn Dennis <glynnsc at gmail.com> 
Cc: bioconductor at r-project.org 
Sent: Tuesday, January 17, 2012 9:48 PM
Subject: Re: [BioC] Bioconductor AMI NOT FOUND

On Tue, Jan 17, 2012 at 10:15 AM, Glynn Dennis <glynnsc at gmail.com> wrote:
> that's it!

Glad it helped.
Dan


>
> Thanks,
> glynn
>
>
> On Tue, Jan 17, 2012 at 10:10 AM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
>>
>> On Tue, Jan 17, 2012 at 10:09 AM, Glynn Dennis <glynnsc at gmail.com> wrote:
>> > Hi Dan, thanks much for the reply.
>> >
>> > I'm not getting any error messages, but here are some screen-shots of
>> > what
>> > is going on.
>> >
>> > Screen-shots of:
>> > Dashboard:
>> > Launch wizard
>> > Community AMI tab
>> > not found ami-9de037f4
>> >
>> > Is there a regional requirment? -- notice I'm in the US-west
>> > N.California
>> > region.
>>
>>
>> Yes, please see my previous email:
>>
>> http://permalink.gmane.org/gmane.science.biology.informatics.conductor/38491
>> Dan
>>
>> >
>> > Thanks,
>> > glynn
>> >
>> >
>> > On Tue, Jan 17, 2012 at 9:18 AM, Dan Tenenbaum <dtenenba at fhcrc.org>
>> > wrote:
>> >>
>> >> On Tue, Jan 17, 2012 at 9:08 AM, Dan Tenenbaum <dtenenba at fhcrc.org>
>> >> wrote:
>> >> > On Tue, Jan 17, 2012 at 8:57 AM, glynn [guest]
>> >> > <guest at bioconductor.org>
>> >> > wrote:
>> >> >>
>> >> >> Hello, I'm trying to start an EC2 instance of R/bioconductor.
>> >> >>
>> >> >> I have an account with AWS.
>> >> >> I have set up other EC2 instances.
>> >> >>
>> >> >> Following the instructions here:
>> >> >> http://bioconductor.org/help/bioconductor-cloud-ami/
>> >> >>
>> >> >> In the Launching the AMI section, neither ami id shown below is
>> >> >> found.
>> >> >>
>> >> >> Is there an up-to-date ami id someone can provide.
>> >> >
>> >> > I am able to launch both AMIs from a personal account. Can you
>> >> > explain
>> >> > exactly what steps you are doing and what error messages you see?
>> >> >
>> >>
>> >> Note that the AMIs are in the us-east-1 region, so if you are using
>> >> the AWS console, you should be using a URL like this:
>> >>
>> >> https://console.aws.amazon.com/ec2/home?region=us-east-1
>> >>
>> >> The web page has been updated to make this explicit.
>> >> Dan
>> >>
>> >>
>> >> > Dan
>> >> >
>> >> >
>> >> >>
>> >> >> Thanks in advance,
>> >> >> glynn
>> >> >>
>> >> >> Bioconductor Version
>> >> >> R Version       AMI ID
>> >> >> 2.9     2.14    ami-9de037f4
>> >> >> 2.8     2.13    ami-4b2fee22
>> >> >>
>> >> >>
>> >> >>  -- output of sessionInfo():
>> >> >>
>> >> >> EC2 question
>> >> >>
>> >> >> --
>> >> >> Sent via the guest posting facility at bioconductor.org.
>> >> >>
>> >> >> _______________________________________________
>> >> >> Bioconductor mailing list
>> >> >> Bioconductor at r-project.org
>> >> >> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> >> >> Search the archives:
>> >> >> http://news.gmane.org/gmane.science.biology.informatics.conductor
>> >
>> >
>
>

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