[BioC] genotyping output files

[Rafiq S.]

Dear All,

I have recently attempted a genome wide genotyping experiment on around 500 samples using the Illumina 660quad chip.
Crlmm genotyping was completed and a snpset object crlmmResult was created.

I have used the calls(crlmmResult) and the configuation command to quickly browse through the genotypes.

I was expecting that at the end of the process crlmm would produce a text file with all the genotypes which could be transported to other softwares like plink for association analysis,
This hasnt happened and a text file was not generated,  however a crlmmResult.Rda file was extracted into SNPchip packages in my rlibrary.

Could you please direct  me towards what other prrocesses which I might  need to complete before I can obtain an output text file all the with genome wide calls?

Many Thanks,

-S