[BioC] GenomicFeatures makeTranscriptDbFromBiomart failure
Malcolm Cook
mec at stowers.org
Tue Jan 3 18:04:02 CET 2012
Hi,
> The patch that Michael mentioned actually arrived at the exact moment
> that I was testing the bug fix above which means that it has a some
> conflicts I will have to resolve, but it should be added to devel very soon.
I am inquiring after the status of the patch that allows 'host' argument to
makeTranscriptDbFromBiomart, which I would like to call as
makeTranscriptDbFromBiomart(biomart = "fungi_mart_12"
,host="fungi.ensembl.org"
,dataset = "spombe_eg_gene"
)
Do you have any suggestions for how to proceed with my aim?
Thanks!
Malcolm Cook - Stowers Institute
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