[BioC] Odd warning in simpleaffy, using quality control

[David Westergaard]

Hello,

I'm trying to run some quality control (qc) on a bunch of raw files
retrieved from ArrayExpress, using simpleaffy, with the code:

mixture.batch <- ReadAffy()
mixture.qc <- qc(mixture.batch)



However, when I get to an experiment which has not used the
"hgu133plus2cdf" platform (In this case, it is experiment
E-GEOD-33443), I encounter a warning:

Error in getCdfInfo(object) :
  Could not obtain CDF environment, problems encountered:
Specified environment does not contain hugene10stv1.r3cdf
Library - package hugene10stv1.r3cdf not installed
Bioconductor - hugene10stv1.r3cdf not available
In addition: Warning message:
In qc.affy(unnormalised, ...) :
  CDF Environment name ' hgu133plus2cdf ' does not match cdfname '
hugene10stv1.r3cdf '


Any help would be appreciated, thank you.

Below the is c/p from SessionInfo():
> sessionInfo()
R version 2.11.0 (2010-04-22)
ia64-unknown-linux-gnu

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] hgu133plus2cdf_2.6.0 multtest_2.4.0       simpleaffy_2.24.0
[4] gcrma_2.20.0         genefilter_1.30.0    affy_1.26.0
[7] Biobase_2.8.0

loaded via a namespace (and not attached):
 [1] AnnotationDbi_1.10.0  Biostrings_2.16.9     DBI_0.2-5
 [4] IRanges_1.6.8         MASS_7.3-5            RSQLite_0.9-4
 [7] affyio_1.16.0         annotate_1.26.0       preprocessCore_1.10.0
[10] splines_2.11.0        survival_2.35-8       tools_2.11.0
[13] xtable_1.5-6