[BioC] Experience with using the 'affy' package (v1.28.1) to perform QC on Affymetrix PrimeView human arrays

[James W. MacDonald]

Hi Daniel,

On 2/22/2012 11:13 PM, Daniel Hurley wrote:
> Hi,
>
> Does anyone have any experience of using the 'affy' package to work with PrimeView human gene expression arrays?
>
> (product reference here: http://www.affymetrix.com/estore/browse/products.jsp?productId=prod530005&categoryId=35760&productName=GeneChip%26%23174%3B-PrimeView%26%23153%3B-Human-Gene-Expression-Array-#1_1)
>
> This is a new array type for me, and I am currently working through using the 'makecdfenv' package  to generate a CDF environment using the CDF provided by Affymetrix.  If anyone's already done this, though, I'd be grateful to hear from you.

Thanks for pointing out that Affy has a new chip. Since this is a 
conventional 3'-biased chip, makecdfenv will create the environment or 
package for you without any problems.

Do you have a particular question?

Best,

Jim



>
> Thanks for your time,
>
> Daniel
>
>
> --
> Daniel Hurley
> Department of Molecular Medicine and Pathology
> Faculty of Medical and Health Sciences
> University of Auckland
> Phone: ++6493737599 xt 81175
>
>
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