[BioC] a problem to install bioconductor on 2.14

wang peter wng.peter at gmail.com
Thu Feb 16 04:48:07 CET 2012


it is on 64 bit windows 7

Program Files/R/R-2.14.1/library are only read, i can not change it

ownloaded packages are in
        C:\Users\shangao\AppData\Local\Temp\RtmpuiUNvI\downloaded_packages
Warning message:
'boot' cannot be updated, installed directory 'C:/Program
Files/R/R-2.14.1/library' not
  writeable
'cluster' cannot be updated, installed directory 'C:/Program
Files/R/R-2.14.1/library'
  not writeable
'foreign' cannot be updated, installed directory 'C:/Program
Files/R/R-2.14.1/library'
  not writeable
'MASS' cannot be updated, installed directory 'C:/Program
Files/R/R-2.14.1/library' not
  writeable
'Matrix' cannot be updated, installed directory 'C:/Program
Files/R/R-2.14.1/library'
  not writeable
'mgcv' cannot be updated, installed directory 'C:/Program
Files/R/R-2.14.1/library' not
  writeable
'nlme' cannot be updated, installed directory 'C:/Program
Files/R/R-2.14.1/library' not
  writeable
'rpart' cannot be updated, installed directory 'C:/Program
Files/R/R-2.14.1/library' not
  writeable
'survival' cannot be updated, installed directory 'C:/Program
Files/R/R-2.14.1/library'
  not writeable


R version 2.14.1 (2011-12-22)
Platform: x86_64-pc-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
[2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
[3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_People's Republic of China.936

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.2.1 DESeq_1.6.1         locfit_1.5-6
lattice_0.20-0
[5] akima_0.5-7         Biobase_2.14.0

loaded via a namespace (and not attached):
 [1] annotate_1.32.1       AnnotationDbi_1.16.16 DBI_0.2-5
 [4] genefilter_1.36.0     geneplotter_1.32.1    grid_2.14.1
 [7] IRanges_1.12.6        RColorBrewer_1.0-5    RSQLite_0.11.1
[10] splines_2.14.1        survival_2.36-10      tools_2.14.1
[13] xtable_1.7-0
-- 
shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute
Cornell University
Tower Road, Ithaca, NY 14853-1801
Office phone: 1-607-254-1267(day)
Official email:sg839 at cornell.edu
Facebook:http://www.facebook.com/profile.php?id=100001986532253



More information about the Bioconductor mailing list