[BioC] how to update DEseq package on windows?
wang peter
wng.peter at gmail.com
Wed Feb 15 17:11:03 CET 2012
my DEseq package could not find the
estimateDispersions( ) function
but it can find the old function
estimateVarianceFunctions(cds)
i donot know how to update this package
> sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
[2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
[3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_People's Republic of China.936
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] DESeq_1.4.1 locfit_1.5-6 lattice_0.19-30 akima_0.5-7
Biobase_2.12.2
loaded via a namespace (and not attached):
[1] annotate_1.30.1 AnnotationDbi_1.14.1 DBI_0.2-5
genefilter_1.34.0 geneplotter_1.30.0
[6] grid_2.13.1 RColorBrewer_1.0-5 RSQLite_0.10.0
splines_2.13.1 survival_2.36-9
[11] tools_2.13.1 xtable_1.5-6
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shan gao
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Boyce Thompson Institute
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