[BioC] how to set library size in DESeq?
wang peter
wng.peter at gmail.com
Wed Feb 15 04:24:51 CET 2012
how to set library size in DESeq?
i know how to set library size in edgeR
d <- DGEList(counts = d, lib.size =
c(9893630,11055814,11207084,9663487,11455088,8140053), group =
group)#生成DGEList对象
but donot know how to set library size in DESeq
it seems i can set size factor
sizeFactors(object) <- value or pData(cds)$sizeFactor <- value
but how to set library size?
--
shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute
Cornell University
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