[BioC] SNPlocs package for dbSNP 135

Hervé Pagès hpages at fhcrc.org
Tue Feb 14 17:22:56 CET 2012


Hi,

I've rolled up a new SNPlocs package, SNPlocs.Hsapiens.dbSNP.20111119,
that contains SNPs ids, locations and alleles, extracted from dbSNP 135:

   > library(SNPlocs.Hsapiens.dbSNP.20111119)
   > sum(getSNPcount())
   [1] 43938303

Its version (0.99.6) and API are exactly the same as for the other
SNPlocs packages. I've postponed the improvements I have on my list
for those packages to the next version (0.99.7). Hopefully that will
happen before the next BioC release.

Cheers,
H.

-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fhcrc.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319



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