[BioC] gene function assessment

[Sean Davis]

What organism?

On Fri, Feb 10, 2012 at 2:48 PM, Abhishek Pratap <apratap at lbl.gov> wrote:
> We have identified a set of genes to be differentially expressed between
> treatment and control.  The current gene annotation doesnt have functional
> information about the gene.
>
> What we would like to do is asses the biological functions of these genes(
> may be based on GO and then cluster them). I was wondering if there is
> something already out there to do so in semi automated way.
>
> I am thinking of blasting them against pfam  or be myhits dbase but wanted
> to take your opinion.
>
> PS  : cross posted on biostar mailing list :
> http://biostar.stackexchange.com/questions/17332/functional-assessment-of-genes
>
> Thanks!
> -Abhi
>
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