[BioC] about library size and length of gene information in DEseq

wang peter wng.peter at gmail.com
Fri Feb 10 17:05:10 CET 2012


i am suing DEseq, but i donot know
how to set length of gene information,
does it use length information in finding differential expressed genes?

and either i donot know how to set library size of each sample
but in edgeR, I can do it by such function
d <- DGEList(counts = d, lib.size =
c(9893630,11055814,11207084,9663487,11455088,8140053), group = group)

-- 
shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute
Cornell University
Tower Road, Ithaca, NY 14853-1801
Office phone: 1-607-254-1267(day)
Official email:sg839 at cornell.edu
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