[BioC] Import sequences from MacClade 4.*
Brian
zenlines at gmail.com
Thu Feb 9 20:37:24 CET 2012
Hello List,
sorry if this is a stupid question, but I am returning some old
sequences that I have laying around, the program is a mac program called
MacClade, but the sequence file looks like:
#NEXUS
[MacClade 4.03 registered to University]
BEGIN DATA;
DIMENSIONS NTAX=53 NCHAR=673;
FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ;
MATRIX
[ 10 20 30 40 50 60]
[ . . . . . .]
[Modal TGAACCTGCGGAAGGAAAATATTATTGAATATATTTTTTA]
AI1A TGAACCTGCGGAACGAAAATATTATTGAATATATTTTTTA [60]
...
Does this look familiar to anyone? Did I overlook some function in the
"seqinr" package? Before I write some function to get the sequences out
for me.
Thanks for the help!
Cheers,
Brian
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