[BioC] package to count read prior to DESeq?

[Nicolas Delhomme]

Hi Nat,

That's what the easyRNASeq (Bioc 2.10) pacakge exactly is for. Let me know if you need any help.

Cheers,

Nico

---------------------------------------------------------------
Nicolas Delhomme

Genome Biology Computational Support

European Molecular Biology Laboratory

Tel: +49 6221 387 8310
Email: nicolas.delhomme at embl.de
Meyerhofstrasse 1 - Postfach 10.2209
69102 Heidelberg, Germany
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On 3 Feb 2012, at 16:39, nathalie wrote:

> Hi,
> Is there a package to create a count table from bam files, which gives an output compatible with DESeq analysis?
> thanks
> Nat
> 
> 
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