[BioC] create GeneSetCollection from OBOCollection

[Marc Carlson]

Hi Wendy,

Can you please be a bit more specific about what you want to do?  Some 
code and the output from sessionInfo() would help a lot.  Also you might 
want to look at our posting guide here:

http://www.bioconductor.org/help/mailing-list/posting-guide/

  I am also curious about why you want to use a GO slim collection 
instead of a regular annotation?


   Marc



On 01/22/2012 11:16 PM, Wendy Qiao wrote:
> Hi all,
>
> I want to use GOStats for gene set enrichment with the GOslim collection.
>
> I find on the GO website that the generic GO slim collection is in the OBO
> format. I am trying to convert the OBOCollection to a gene set collection
> so I can use the GSEAGOHyperGparams function for GSEA. After hours trial
> and error, I still don't figure out how to convert create the
> genesetcollection from obocollection. Could anybody please help? Any advice
> is appreciated. Thank you!
>
>
> Wendy
>
> 	[[alternative HTML version deleted]]
>
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