[BioC] biomart database version problem
James W. MacDonald
jmacdon at uw.edu
Wed Aug 29 19:18:06 CEST 2012
From ?useMart I see
archive: Boolean to indicate if you want to access archived versions
of BioMart databases. Note that this gives access to only a
limited number of archived BioMarts and the most recent
archives are often not available. A better alternative is to
leave archive = FALSE and to specify the url of the archived
BioMart you want to access see vignette for an example.
and if I then look at the vignette I see that this is outlined clearly
on pages 14-15.
On 8/29/2012 1:10 PM, lemon tree wrote:
> Dear All,
> Recently, I found the mouse gene annotation in biomart had been changed
> to the version GRCm38 (mm10). However, I want to use mm9 version.
> Could anyone give some suggestions about how to do this? My code is
> mart<- useMart(biomart="ensembl",dataset="mmusculus_gene_ensembl")
> Best all!
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James W. MacDonald, M.S.
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099
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