[BioC] biomart database version problem

[James W. MacDonald]

Hi David,

 From ?useMart I see

archive: Boolean to indicate if you want to access archived versions
           of BioMart databases.  Note that this gives access to only a
           limited number of archived BioMarts and the most recent
           archives are often not available. A better alternative is to
           leave archive = FALSE and to specify the url of the archived
           BioMart you want to access see vignette for an example.

and if I then look at the vignette I see that this is outlined clearly 
on pages 14-15.

Best,

Jim



On 8/29/2012 1:10 PM, lemon tree wrote:
> Dear All,
>     Recently, I found the mouse gene annotation in biomart had been changed
> to the version GRCm38 (mm10). However, I want to use mm9 version.
> Could anyone give some suggestions about how to do this? My code is
> mart<- useMart(biomart="ensembl",dataset="mmusculus_gene_ensembl")
>
> Thanks!
>
> Best all!
>
> David!
>
> 	[[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099