[BioC] Rgraphviz- \"len\" is not a graphical parameter
narsis [guest]
guest at bioconductor.org
Mon Aug 27 17:52:44 CEST 2012
I have installed Rgraphvis on my computer
(OS:Windows vista.
I have tried to make the following graph
V <- letters[1:10]
> M <- 1:4
> set.seed(123)
> V <- letters[1:10]
> M <- 1:4
> g1 <- randomGraph(V, M, .2)
> plot(g1, "neato")
Then I got following error:
There were 32 warnings (use warnings() to see them)
> warnings()
Warning messages:
1: In plot.xy(xy.coords(x, y), type = type, ...) :
"len" is not a graphical parameter
2: In plot.xy(xy.coords(x, y), type = type, ...) :
"edgemode" is not a graphical parameter
3: In plot.xy(xy.coords(x, y), type = type, ...) :
"len" is not a graphical parameter
4: In plot.xy(xy.coords(x, y), type = type, ...) :
"edgemode" is not a graphical parameter
....
I have cheked Path variables for both R and Graphvis
strsplit(Sys.getenv("PATH"), ";")
[[1]]
[1] "C:\\Program Files\\copasi.org\\COPASI 4.8.35\\bin"
[2] "C:\\Program Files\\Common Files\\Microsoft Shared\\Windows Live"
[3] "C:\\texmf\\miktex\\bin"
[4] "C:\\Windows\\system32"
[5] "C:\\Windows"
[6] "C:\\Windows\\System32\\Wbem"
[7] "C:\\Program Files\\Common Files\\Roxio Shared\\9.0\\DLLShared\\"
[8] "C:\\Program Files\\Common Files\\Roxio Shared\\DLLShared\\"
[9] "c:\\Program Files\\Microsoft SQL Server\\100\\Tools\\Binn\\"
[10] "c:\\Program Files\\Microsoft SQL Server\\100\\DTS\\Binn\\"
[11] "C:\\Windows\\System32\\WindowsPowerShell\\v1.0\\"
[12] "C:\\Program Files\\Windows Live\\Shared"
[13] "C:\\Program Files\\QuickTime\\QTSystem\\"
[14] "C:\\Program Files\\MATLAB\\R2010b\\runtime\\win32"
[15] "C:\\Program Files\\MATLAB\\R2010b\\bin"
[16] "c:\\Program Files\\Graphviz2.20\\bin"
[17] "C:\\Program Files\\SSH Communications Security\\SSH Secure Shell"
and
list.files(strsplit(Sys.getenv("PATH"), ";")[[1]][[14]], "dll")
[1] "mclcom7_14.dll" "mclcommain7_14.dll" "mclmcrrt7_14.dll"
[4] "mclxlmain7_14.dll" "msvcp60.dll" "mwcommgr.dll"
[7] "mwcomutil.dll"
I do not know what is the problem , It would be appreciated if you can help me.
Best
Narsis
-- output of sessionInfo():
R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] grid stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] Rgraphviz_1.34.2 graph_1.34.0 BiocInstaller_1.4.7
loaded via a namespace (and not attached):
[1] BiocGenerics_0.2.0 stats4_2.15.1 tools_2.15.1
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