[BioC] how to plot quality report

[wang peter]

i tried to use ShortRead to get quality report
but i am confused there is no parameter to set quality score type
phred+33 or phred+64

library(ShortRead)
fastqfile="P11_ACTTGA.fastq"


qa <- qa(dirPath=".", pattern=fastqfile, type=c("fastq"))
report(qa, dest="qcReport1", type="html")

-- 
shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute
Cornell University
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