[BioC] how to plot quality report

wang peter wng.peter at gmail.com
Tue Aug 14 17:19:03 CEST 2012

i tried to use ShortRead to get quality report
but i am confused there is no parameter to set quality score type
phred+33 or phred+64


qa <- qa(dirPath=".", pattern=fastqfile, type=c("fastq"))
report(qa, dest="qcReport1", type="html")

shan gao
Room 231(Dr.Fei lab)
Boyce Thompson Institute
Cornell University
Tower Road, Ithaca, NY 14853-1801
Office phone: 1-607-254-1267(day)
Official email:sg839 at cornell.edu

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