[BioC] Failed loading Biobase

[Dan Tenenbaum]

On Mon, Aug 13, 2012 at 3:12 PM, Sean Davis <sdavis2 at mail.nih.gov> wrote:
> On Mon, Aug 13, 2012 at 6:09 PM, joseph <jdsandjd at yahoo.com> wrote:
>
>> Hi
>> I installed R-devel-leopard.pkg (56Mb, installer incl. GUI) from
>> http://r.research.att.com/ on my Mac.
>> I installed core Bioconductor packages with:
>>
>> source("http://bioconductor.org/biocLite.R")
>>
>> biocLite()
>> I got the following error when I tried to load Biobase:
>> Please help me to solve this issue.
>>
>>
>> Loading required package: BiocGenerics
>> Attaching package: ‘BiocGenerics’
>> The following object(s) are masked from ‘package:stats’:
>>     xtabs
>> The following object(s) are masked from ‘package:base’:
>>     anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get,
>> intersect,
>>  lapply, Map, mapply, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
>> Position, rbind, Reduce,
>>     rep.int, rownames, sapply, setdiff, table, tapply, union, unique
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>   unable to load shared object
>> '/Library/Frameworks/R.framework/Versions/2.16/Resources/library/Biobase/libs/x86_64/Biobase.so':
>>
>>
>>
>> dlopen(/Library/Frameworks/R.framework/Versions/2.16/Resources/library/Biobase/libs/x86_64/Biobase.so,
>>  6): Library not loaded:
>> /Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libR.dylib
>>   Referenced from:
>> /Library/Frameworks/R.framework/Versions/2.16/Resources/library/Biobase/libs/x86_64/Biobase.so
>>   Reason: image not found
>> Error: package/namespace load failed for ‘Biobase’
>> starting httpd help server ... done
>>
>
>
>>
>>
>> > sessionInfo()
>> R Under development (unstable) (2012-08-11
>>  r60235)
>>
>
> Hi, Joseph.
>
> Bioconductor currently works with R-2.15 and not R-devel for both the
> development and release versions of bioconductor.  Give the latest R-2.15 a
> try and let us know if you still have problems.
>

If you want to use the devel version of Bioconductor (2.11), do the
following after installing R-2.15:

source("http://bioconductor.org/biocLite.R")
useDevel()

Otherwise biocLite() will install packages for the release version of
Bioconductor (2.10).
Dan



> Sean
>
>
>
>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> other attached packages:
>> [1] BiocGenerics_0.3.1
>>
>> loaded via a namespace (and not attached):
>> [1] tools_2.16.0
>> >
>>         [[alternative HTML version deleted]]
>>
>>
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>
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>
>
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