[BioC] annotation package for Agilent Human GE 4x44K v2 (catalog # G4845A)

James W. MacDonald jmacdon at uw.edu
Tue Aug 7 19:27:00 CEST 2012

Hi Hari,

On 8/7/2012 12:30 PM, Hari Easwaran wrote:
> Dear all,
> Is the annotation package for Agilent Human GE 4x44K v2 (catalog # G4845A)
> array available in Bioconductor. I am not sure if "hgug4110b.db" is the one
> I am looking for.

I am pretty sure that is not what you want. Agilent had microarrays 
called the G4110A and G4110B, and those are what the hgug4110a.db and 
hgug4110b.db are designed for.

I am not familiar with Agilent's website, and a cursory glance didn't 
result in me finding the annotation file for this array. But if you have 
such a thing (with say columns that contain the Agilent ID and another 
with Gene, UniGene, RefSeq, etc type IDs), then you can create your own 
pretty easily using the AnnotationDbi package.



> Can someone help?
> Thanks is advance.
> Hari
> 	[[alternative HTML version deleted]]
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James W. MacDonald, M.S.
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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