[BioC] easyRNASeq install problem

[Wolfgang Huber]

Ann,

please use current version of R, 2.15.1.
Yours is two years out of date.

	Best wishes
	Wolfgang


Aug/3/12 10:39 PM, Loraine, Ann scripsit::
> Hello,
>
> I'm trying to set up easyRNASeq on a cluster system (where I don't have root) and am getting this error:
>
>> biocLite("easyRNASeq")
> Using R version 2.11.1, biocinstall version 2.6.10.
> Installing Bioconductor version 2.6 packages:
> [1] "easyRNASeq"
> Please wait...
>
> Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
>    argument 'lib' is missing: using '/lustre/home/aloraine/R/x86_64-pc-linux-gnu-library/2.11'
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
>    package ‘easyRNASeq’ is not available
>
> I found documentation that explains that this error message "package 'something' is not available' means that some dependencies are missing, which can happen if a package is not available for a given system.
>
> This system is Linux, and I would think that would not be a problem here.
>
>> sessionInfo()
> R version 2.11.1 (2010-05-31)
> x86_64-pc-linux-gnu
>
> locale:
>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>   [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
>   [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tcltk_2.11.1 tools_2.11.1
>
> Could you help?
>
> Best,
>
> Ann
>
> -------------------------------
> Ann Loraine, Ph.D.
> Associate Professor
> Department of Bioinformatics and Genomics
> University of North Carolina at Charlotte
> North Carolina Research Campus
> 600 Laureate Way
> Kannapolis, NC 28081
> 704-250-5750
> aloraine at uncc.edu
> http://www.transvar.org
> http://www.bioviz.org
> http://www.uncc.edu
>
>
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>
>
>
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-- 
Best wishes
	Wolfgang

Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber