[BioC] summarizeOverlaps - circular MT

[Stefanie Tauber]

I forgot:

> sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] biomaRt_2.12.0        GenomicFeatures_1.8.1 AnnotationDbi_1.18.0 
[4] Biobase_2.16.0        Rsamtools_1.8.0       Biostrings_2.24.0    
[7] GenomicRanges_1.8.1   IRanges_1.14.2        BiocGenerics_0.2.0   

loaded via a namespace (and not attached):
 [1] bitops_1.0-4.1     BSgenome_1.24.0    DBI_0.2-5          RCurl_1.91-1      
 [5] RSQLite_0.11.1     rtracklayer_1.16.0 stats4_2.15.0      tools_2.15.0      
 [9] XML_3.9-4          zlibbioc_1.2.0