[BioC] help with reduction operation using IRanges/GRanges

[Kasper Daniel Hansen]

Use the min.gapwidth argument to reduce, as explained in the help page.

Kasper

On Tue, Apr 24, 2012 at 2:47 PM, Abhishek Pratap <apratap at lbl.gov> wrote:
> Hi Guys
>
> I am trying to run a reduce operation on my genomic interval data.
>
> Sample Data and expected output pasted here : http://pastebin.com/cccZby2t
>
>
> Rows 1-5 from input have merged since the tiling distance between them is <
> 2 bp. Ideally I would like to define that distance.
> Rows 5-6 are merged separately as their distance is more than 2 bp from the
> above rows.
>
> I hope tiling is the right word above. In essence what I want to do is
> define a max merging width and merge all the intervals which are within
> this user defined threshold . The condition of tiling distance should be
> satisfied by both start and end.
>
> Hope this is clear.
>
> Thanks!
> -Abhi
>
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>
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