[BioC] RCurl problem

[James W. MacDonald]

Hi Ina,

On 4/24/2012 3:19 PM, Ina Hoeschele wrote:
> Hi all,
>    sorry for this silly problem. I'm trying to install biomaRt on a new PC and there seems to be a problem with the required RCurl, please see below. Can someone give me a hint?

You are probably missing libcurl. See

http://www.omegahat.org/RCurl/FAQ.html

Best,

Jim


> Thanks, Ina
>
> * installing *source* package ‘RCurl’ ...
> ** package ‘RCurl’ successfully unpacked and MD5 sums checked
> checking for curl-config... no
> Cannot find curl-config
> ERROR: configuration failed for package ‘RCurl’
> * removing ‘/home/inah/R/x86_64-pc-linux-gnu-library/2.15/RCurl’
>
> The downloaded source packages are in
> 	‘/tmp/RtmpWLdm34/downloaded_packages’
> Warning message:
> In install.packages("RCurl") :
>    installation of package ‘RCurl’ had non-zero exit status
>
>> sessionInfo()
> R version 2.15.0 (2012-03-30)
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> locale:
>   [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>   [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>   [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>   [7] LC_PAPER=C                 LC_NAME=C
>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] grid      stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
>   [1] canine2.db_2.7.1     org.Cf.eg.db_2.7.1   RSQLite_0.11.1
>   [4] DBI_0.2-5            annotate_1.34.0      AnnotationDbi_1.18.0
>   [7] made4_1.30.0         scatterplot3d_0.3-33 gplots_2.10.1
> [10] KernSmooth_2.23-7    caTools_1.12         bitops_1.0-4.1
> [13] gdata_2.8.2          gtools_2.6.2         RColorBrewer_1.0-5
> [16] ade4_1.5-0           affy_1.34.0          Biobase_2.16.0
> [19] BiocGenerics_0.2.0   BiocInstaller_1.4.3  limma_3.12.0
>
> loaded via a namespace (and not attached):
> [1] affyio_1.24.0         IRanges_1.14.2        preprocessCore_1.18.0
> [4] stats4_2.15.0         tcltk_2.15.0          tools_2.15.0
> [7] xtable_1.7-0          zlibbioc_1.2.0
>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099