[BioC] Overlay Gene Expression on SNP (copy number) data

[Steve Lianoglou]

Hi,

On Mon, Apr 23, 2012 at 7:33 AM, Ekta Jain <Ekta_Jain at jubilantbiosys.com> wrote:
> Hello,
> Can anyone please suggest any packages in R that can be used to overlay gene expression data on SNP (affymetrix) copy number ?

I guess you mean visually? If so, I'd suggest skimming through the
vignettes of the following packages to see which one might suit you
best:

* Gviz
* ggbio
* GenomeGraphs

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact