[BioC] MotIV is not installed properly

[Dan Tenenbaum]

Hello,

On Wed, Apr 18, 2012 at 1:43 PM, Swaroopa Muppiri <swaroopa at appistry.com> wrote:
> Iam trying to install MotIV
>
> Here is the error :
>
> [exec] /usr/bin/ld: cannot find -lgsl
>     [exec] collect2: ld returned 1 exit status
>     [exec] make: *** [MotIV.so] Error 1
>     [exec] ERROR: compilation failed for package āMotIVā
>     [exec] * removing ā/opt/users/swaroopa/LSBUILDBOX/trunk/dependencies/bioconductor210/build/portable-R/site-library/MotIVā
>     [exec] ERROR: command  LD_LIBRARY_PATH=/opt/users/swaroopa/LSBUILDBOX/trunk/dependencies/bioconductor210/build/srcLibs/../../../gsl-1_13/gsl/lib GSL_CONFIG=/opt/users/swaroopa/LSBUILDBOX/trunk/dependencies/bioconductor210/build/srcLibs/../../../gsl-1_13/gsl/bin/gsl-config ../portable-R/R CMD INSTALL MotIV > out.txt failed! (1)
>
> I verified libgsl.so file by typing locate libgsl.so and it pointed to the exact directory iam pointing to .
>
> I am expecting a linker error .
>
> If anyone has some idea please let me know
>

Do you have GSL installed on your machine?

For most linux distributions there are GSL packages that can be
installed with apt-get (debian/ubuntu), yum (fedora), zypper
(openSUSE), etc.

You will need the GSL development (headers) package as well. On ubuntu
it's called libgsl-dev, on RPM-based systems it's called libgsl-devel.

Dan



> Thanks,
> Swaroopa
>
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>
>
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