[BioC] Extracting elements from a table with VennCounts
lcarvalh at btk.fi
lcarvalh at btk.fi
Tue Apr 17 11:19:44 CEST 2012
I have a table in this format that comes from the function vennCounts:
c1 c2 c3 c4 Counts
[1,] 0 0 0 0 26
[2,] 0 0 0 1 27
[3,] 0 0 1 0 4
[4,] 0 0 1 1 6
[5,] 0 1 0 0 5
[6,] 0 1 0 1 12
[7,] 0 1 1 0 42
[8,] 0 1 1 1 78
[9,] 1 0 0 0 18
[10,] 1 0 0 1 52
[11,] 1 0 1 0 4
[12,] 1 0 1 1 63
[13,] 1 1 0 0 13
[14,] 1 1 0 1 47
[15,] 1 1 1 0 88
[16,] 1 1 1 1 182
attr(,"class")
[1] "VennCounts"
I am trying to write a R script that will "extract" from the table for example
the cases that have c2==1, (c2 and c3)== 1, (c2 and c4)==1, (c1 and c2 and
c3)==1, and so on ... so that in the end I will have a list that has the Counts
value for each case.
Example list for columns that have c2 == 1: C2<-c(4, 42, 12, ...)
I tried to it on this way: totalC2<-table[table[c1]], also if I use table$c1 ==
1 it is not working.
Can anyone give-me a suggestion how to solve this problem?
Thank you,
Leonor
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